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Research Article Pages 1-8
Abstract: In this article, we present GNUMAP (Genomic Next-generation Universal MAPper), a next-generation sequence read mapper, that utilizes a Full-text index in Minute Space (FM-index) with the Burrows-Wheeler Transform (BWT) as the reference genome data structure. Using the FM-index, GNUMAP is able to map reads with a dramatic decrease in memory usage while maintaining the same probabilistic mapping characteristics of previous versions.
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