Table 5: CBSV and UCBSV concentration or viral loads (fold change relative to 2-∆∆CT for COX) analyzed in different cassava germplasm.
Class |
Germplasm |
CBSV |
UCBSV |
Class |
Germplasm |
CBSV |
UCBSV |
Class |
Germplasm |
CBSV |
UCBSV |
LCLs |
Shavirotsi |
1.2 |
0.0 |
LCLs |
Nya-Yenga |
23.3 |
0.02 |
LCLs |
Kitwa_b |
0.6 |
0.0 |
" |
Bwichina |
6.0 |
0.8 |
" |
Nya-Gang |
36.6 |
0.03 |
" |
Kitwa_c |
1.3 |
0.0 |
" |
Lunyalala |
5.8 |
0.0 |
" |
Nyal-Kada |
18.8 |
0.9 |
" |
Masokani_a |
2.9 |
0.002 |
" |
Shanina |
7.4 |
1.8 |
" |
Nya-Udai |
17.3 |
0.8 |
" |
Masokani_b |
2.9 |
0.0 |
" |
Mukulusu |
0.0 |
0.0 |
" |
Adhiambo Lera |
15.2 |
0.06 |
" |
Kaliluni |
0.0 |
0.0 |
" |
Itenyi |
12.8 |
3.0 |
" |
Nya-Bungoma |
27.2 |
0.04 |
" |
Muvila |
0.0 |
0.0 |
" |
Shisembe |
10.4 |
2.1 |
IPGs |
Lady Gay |
0.02 |
0.0 |
" |
Kalimbini_a |
0.0 |
0.0 |
" |
Inzakula |
0.0 |
0.0 |
IPGs |
Kiboko-297 |
1.9 |
0.0 |
" |
Kalimbini_b |
4.2 |
0.007 |
" |
Shitaho |
8.8 |
0.0 |
" |
Thika-272 |
0.09 |
0.0 |
" |
Kalimbini_c |
3.4 |
0.002 |
" |
Lugala |
6.4 |
0.0 |
" |
Thika-273 |
0.0 |
0.0 |
" |
Kalimbini_d |
4.2 |
0.02 |
" |
Lugusisti |
0.0 |
0.0 |
" |
Kiboko-275 |
0.0 |
0.0 |
" |
Kitivo |
6.8 |
0.02 |
" |
Banasa |
13.5 |
1.8 |
" |
Kiboko-274 |
0.0 |
0.0 |
" |
Kimutwa |
2.1 |
0.003 |
" |
Isambe |
0.0 |
0.0 |
" |
Thika-280 |
0.04 |
0.0 |
" |
Mumbuni |
1.5 |
0.0 |
" |
Isulu |
18.8 |
3.0 |
" |
Kiboko-300 |
0.0 |
0.0 |
IPGs |
Katsuhanzala |
7.6 |
0.0 |
" |
Ikholi |
2.8 |
0.0 |
" |
Kiboko-271 |
0.0 |
0.0 |
" |
Kasukari |
4.2 |
0.0 |
" |
Ingotse |
10.6 |
4.2 |
" |
Thika-279 |
0.0 |
0.0 |
" |
TC14 |
17.9 |
0.0 |
" |
Shikoti |
8.8 |
2.2 |
" |
Thika-289 |
0.0 |
0.0 |
" |
TC4-Katune |
7.8 |
0.02 |
" |
Shipalo |
9.2 |
1.8 |
" |
Kiboko-295 |
0.0 |
0.0 |
" |
99/0056 |
2.8 |
0.0 |
" |
Shamiloli |
0.0 |
0.0 |
" |
Kiboko-277 |
0.0 |
0.0 |
LCLs |
Halu |
2.3 |
0.0 |
" |
Madioli |
21.4 |
0.8 |
" |
Kiboko-276 |
0.0 |
0.0 |
" |
Kibandameno |
8.2 |
0.3 |
" |
Shiswa |
6.4 |
0.0 |
" |
Thika-278 |
0.0 |
0.0 |
" |
Tajirika |
7.8 |
0.3 |
" |
Magana |
0.0 |
0.0 |
" |
Kiboko-281 |
0.0 |
0.0 |
" |
Kaleso |
6.4 |
0.1 |
" |
Matuja |
7.2 |
0.0 |
" |
Kiboko-9 |
0.0 |
0.0 |
" |
Soyosoyo |
6.8 |
0.9 |
" |
Fumbachai |
9.6 |
3.0 |
" |
Kiboko-10 |
0.0 |
0.0 |
" |
Sokoke_I |
7.8 |
0.1 |
IPGs |
CK9 |
3.0 |
0.0 |
" |
Kiboko-11 |
0.0 |
0.0 |
" |
Sokoke_II |
2.1 |
0.2 |
" |
MM96/1871 |
8.4 |
0.0 |
" |
Kiboko-159 |
8.8 |
0.02 |
" |
Kakanjuni_I |
4.4 |
0.5 |
" |
MM97/0293 |
8.6 |
0.0 |
" |
Kiboko-257 |
0.0 |
0.0 |
" |
Kakanjuni_II |
7.2 |
0.4 |
" |
MM98/1313-HS |
0.0 |
0.0 |
" |
Kiboko-258 |
0.0 |
0.0 |
" |
Kakanjuni_III |
2.8 |
0.0 |
" |
MH95/0183 |
11.8 |
3.4 |
" |
Kiboko-259 |
0.0 |
0.0 |
" |
Mkongo_I |
5.6 |
0.2 |
" |
MM08/2206 |
0.0 |
0.0 |
" |
Kiboko-267 |
12.6 |
2.4 |
" |
Mkongo_II |
0.3 |
0.0 |
" |
MM96/0686 |
0.0 |
0.0 |
" |
Kiboko-268 |
12.0 |
2.6 |
" |
Cha-Vyango_I |
7.3 |
0.1 |
LCLs |
Aruaro |
2.4 |
0.02 |
" |
Kiboko-269 |
12.0 |
3.4 |
" |
Cha-Vyango_II |
10.3 |
1.5 |
" |
Othigo-Diep |
8.9 |
0.3 |
" |
Kiboko-270 |
9.8 |
0.2 |
" |
Chumani |
2.1 |
0.0 |
" |
Nyakatanegi_a |
12.5 |
0.9 |
LCLs |
Serere |
13.3 |
0.2 |
" |
Matano Manne |
2.7 |
0.0 |
" |
Nyakatanegi_b |
9.7 |
0.5 |
" |
Thika-5 |
20.1 |
0.5 |
IPGs |
KALRO |
9.3 |
1.4 |
" |
Nya-Uyoma |
17.2 |
0.2 |
LCLs |
Kasioni |
0.0 |
0.0 |
" |
Agriculture |
8.8 |
1.9 |
" |
Kamis |
7.7 |
0.3 |
" |
Kisimba |
0.0 |
0.0 |
|
|
|
|
" |
Nya-Uganda |
39.3 |
1.9 |
" |
Kitwa_a |
0.0 |
0.0 |
|
|
CBSV = cassava brown streak virus; UCBSV = Ugandan CBSV; COX = mitochondrial cytochrome oxidase; LCLs = local landraces; IPGs = improved genotypes; red = germplasm from Kakamega; green = germplasm from Siaya; blue = germplasm from Kitui; pink = germplasm from Makueni and black = germplasm from Kilifi.