Table
3: List of viruses and
bacteriophage in the human gastric microbiome normalized for genomic length of
the respective virus. Genome size was estimated based on the mean genome size
of representative organisms listed in NCBI.
|
Reads per kilobase per million (RPKM) |
|
|||||
|
|
Genome size (kb) |
UM022 |
UM037 |
UM067 |
UM122 |
Target |
1 |
Retroviridae |
8.9 |
342.5762 |
265.8633 |
304.2758 |
267.6552 |
Human endogenous retrovirus |
2 |
Microviridae |
5.0 |
0.8069 |
0.6052 |
1.6138 |
0.8069 |
Enterobacteria phage |
3 |
Siphoviridae |
45.0 |
0.0444 |
0.3774 |
0.1776 |
0.3996 |
Staphylococcus phage, Burkholderia phage, Propionibacterium phage |
4 |
Picornaviridae |
8.0 |
0.2494 |
0.0000 |
0.1247 |
0.1247 |
Human enterovirus |
5 |
Inoviridae |
7.1 |
0.0000 |
0.0000 |
0.1413 |
0.2826 |
Xanthomonas phage |
6 |
Herpesviridae |
158.4 |
0.0063 |
0.1515 |
0.1515 |
0.0379 |
|
7 |
Unclassified |
|
0.0000 |
0.0000 |
0.0000 |
0.0733 |
Staphylococcus phage |
8 |
Myoviridae |
112.4 |
0.0089 |
0.0356 |
0.0178 |
0.0089 |
Burkholderia phage |
9 |
Alloherpesviridae |
248.5 |
0.0080 |
0.0161 |
0.0080 |
0.0080 |
|
10 |
Podoviridae |
56.7 |
0.0000 |
0.0000 |
0.0000 |
0.0353 |
|
11 |
Phycodnaviridae |
|
0.0000 |
0.0149 |
0.0091 |
0.0212 |
|
12 |
Ascoviridae |
159.1 |
0.0000 |
0.0126 |
0.0000 |
0.0000 |
|
13 |
Poxviridae |
196.3 |
0.0000 |
0.0000 |
0.0000 |
0.0051 |
|
14 |
Polydnaviridae |
306.2 |
0.0000 |
0.0033 |
0.0000 |
0.0000 |
|