Table 3: List of viruses and bacteriophage in the human gastric microbiome normalized for genomic length of the respective virus. Genome size was estimated based on the mean genome size of representative organisms listed in NCBI.

 

Reads per kilobase per million (RPKM)

 

 

 

Genome size (kb)

UM022

UM037

UM067

UM122

Target

1

Retroviridae

8.9

342.5762

265.8633

304.2758

267.6552

Human endogenous retrovirus

2

Microviridae

5.0

0.8069

0.6052

1.6138

0.8069

Enterobacteria phage

3

Siphoviridae

45.0

0.0444

0.3774

0.1776

0.3996

Staphylococcus phage, Burkholderia phage, Propionibacterium phage

4

Picornaviridae

8.0

0.2494

0.0000

0.1247

0.1247

Human enterovirus

5

Inoviridae

7.1

0.0000

0.0000

0.1413

0.2826

Xanthomonas phage

6

Herpesviridae

158.4

0.0063

0.1515

0.1515

0.0379

 

7

Unclassified

 

0.0000

0.0000

0.0000

0.0733

Staphylococcus phage

8

Myoviridae

112.4

0.0089

0.0356

0.0178

0.0089

Burkholderia phage

9

Alloherpesviridae

248.5

0.0080

0.0161

0.0080

0.0080

 

10

Podoviridae

56.7

0.0000

0.0000

0.0000

0.0353

 

11

Phycodnaviridae

 

0.0000

0.0149

0.0091

0.0212

 

12

Ascoviridae

159.1

0.0000

0.0126

0.0000

0.0000

 

13

Poxviridae

196.3

0.0000

0.0000

0.0000

0.0051

 

14

Polydnaviridae

306.2

0.0000

0.0033

0.0000

0.0000