Table 2: List of eukaryotes and prokaryotes in the human gastric microbiome normalized for genomic length of the respective organism. Genome size was estimated based on the mean genome size of representative organisms listed in NCBI.

 

Reads per kilobase per million (RPKM)

 

Species

Genome size (kb)

UM022

UM037

UM067

UM122

1

Chlamydia sp.

1,126.7

2.6246

3.7598

4.1532

5.0515

2

Staphylococcus aureus

2,799.7

0.5919

1.0061

0.7435

1.1061

3

Leuconostoc sp. DORA 2

1,794.9

0.7773

1.4792

1.2433

1.8620

4

Streptococcus sp.

1,997.9

0.5582

0.7792

0.7872

1.0507

5

Helicobacter pylori

1,634.8

0.6388

0.9423

0.8695

1.2531

6

Lactobacillus brevis

2,601.9

0.2228

0.3303

0.5137

0.3849

7

Leptotrichia oral taxon 879

2,374.9

0.0007

0.6163

0.0279

0.4824

8

Enterobacter cloacae

4,933.9

0.0656

0.0861

0.0919

0.1313

9

Bordetella bronchiseptica

5,191.3

0.0598

0.0823

0.0873

0.1183

10

Malassezia sp.

7,870.9

0.0394

0.0522

0.0763

0.0563

11

Porphyromonas gingivalis

2,325.2

0.0763

0.1242

0.1946

0.1455

12

Burkholderia pseudomallei

7,127.0

0.0056

0.1272

0.0200

0.0196

13

Mycobacterium sp.

4,921.5

0.0262

0.0429

0.0405

0.0571

14

Toxoplasma sp.

64,193.6

0.0018

0.0022

0.0024

0.0020

15

Paenibacillus sp. MSt1

6,486.9

0.0082

0.0094

0.0460

0.0103

16

Vibrio sp.

5,146.0

0.0135

0.0242

0.0190

0.0289

17

Pseudogymnoascus sp.

31,270.8

0.0017

0.0029

0.0026

0.0037

18

Nematoda

205,667.3

0.0001

0.0002

0.0005

0.0001