Table 2: List of eukaryotes and prokaryotes in
the human gastric microbiome normalized for genomic length of the respective
organism. Genome size was estimated based on the mean genome size of
representative organisms listed in NCBI.
|
Reads per kilobase
per million (RPKM) |
|||||
|
Species |
Genome size (kb) |
UM022 |
UM037 |
UM067 |
UM122 |
1 |
Chlamydia
sp. |
1,126.7 |
2.6246 |
3.7598 |
4.1532 |
5.0515 |
2 |
Staphylococcus
aureus |
2,799.7 |
0.5919 |
1.0061 |
0.7435 |
1.1061 |
3 |
Leuconostoc sp. DORA 2 |
1,794.9 |
0.7773 |
1.4792 |
1.2433 |
1.8620 |
4 |
Streptococcus
sp. |
1,997.9 |
0.5582 |
0.7792 |
0.7872 |
1.0507 |
5 |
Helicobacter
pylori |
1,634.8 |
0.6388 |
0.9423 |
0.8695 |
1.2531 |
6 |
Lactobacillus
brevis |
2,601.9 |
0.2228 |
0.3303 |
0.5137 |
0.3849 |
7 |
Leptotrichia oral taxon 879 |
2,374.9 |
0.0007 |
0.6163 |
0.0279 |
0.4824 |
8 |
Enterobacter
cloacae |
4,933.9 |
0.0656 |
0.0861 |
0.0919 |
0.1313 |
9 |
Bordetella
bronchiseptica |
5,191.3 |
0.0598 |
0.0823 |
0.0873 |
0.1183 |
10 |
Malassezia sp. |
7,870.9 |
0.0394 |
0.0522 |
0.0763 |
0.0563 |
11 |
Porphyromonas gingivalis |
2,325.2 |
0.0763 |
0.1242 |
0.1946 |
0.1455 |
12 |
Burkholderia pseudomallei |
7,127.0 |
0.0056 |
0.1272 |
0.0200 |
0.0196 |
13 |
Mycobacterium
sp. |
4,921.5 |
0.0262 |
0.0429 |
0.0405 |
0.0571 |
14 |
Toxoplasma sp. |
64,193.6 |
0.0018 |
0.0022 |
0.0024 |
0.0020 |
15 |
Paenibacillus sp. MSt1 |
6,486.9 |
0.0082 |
0.0094 |
0.0460 |
0.0103 |
16 |
Vibrio
sp. |
5,146.0 |
0.0135 |
0.0242 |
0.0190 |
0.0289 |
17 |
Pseudogymnoascus sp. |
31,270.8 |
0.0017 |
0.0029 |
0.0026 |
0.0037 |
18 |
Nematoda |
205,667.3 |
0.0001 |
0.0002 |
0.0005 |
0.0001 |