Table 2: Molecular Mechanics (MM) complexation Gibbs free energy (ΔΔGcom) and its components for the training set.
Training seta | Mwb | ΔΔHMMc | ΔΔGsolvd | ΔΔTSvibe | ΔΔGcompf | g |
---|---|---|---|---|---|---|
(g/mol) | (kcal/mol) | (µM) | ||||
AVSH1 | 746 | 0 | 0 | 0 | 0 | 16.5 |
AVSH2 | 836 | -0.32 | 1.01 | -2.18 | 2.87 | 22.4 |
AVSH3 | 850 | -5.03 | 6.04 | -0.15 | 1.16 | 9.22 |
AVSH4 | 816 | -1.02 | 0.68 | 2.61 | -2.95 | 4.95 |
AVSH5 | 788 | -1.29 | 4.58 | 0.92 | 2.37 | 21.6 |
AVSH6 | 754 | -10.22 | 1.46 | 3.42 | -12.18 | 0.35 |
aFor the chemical structures of the training set of inhibitors see Table 1; bMw is the molecular mass of inhibitors; cΔΔHMM is the relative enthalpic contribution to the Gibbs free energy change related to Enzyme:Inhibitor (E:I) complex formation derived by Molecular Mechanics (MM): , Iref is the reference inhibitor AVSH1; dΔΔGsolv is the relative solvation Gibbs free energy contribution to the Gibbs free energy change of E:I complex formation: ΔΔGsolv = [Gsol{E:Ix}- Gsol{Ix}] - [Gsol{E:Iref} - Gsol{Iref}]; eΔΔTSvib is the relative entropic contribution of inhibitor Ix to the Gibbs free energy related to E:I complex formation; ΔΔTSvib = [ΔΔTSvib{Ix}E- ΔΔTSvib {Ix}] - [ΔΔTSvib {Iref}E- ΔΔTSvib{Iref}]; f is the relative Gibbs free energy change related to E:Ix complex formation; g is the experimental half-maximal inhibitory concentration of FP2 inhibition obtained from reference [13].