Table S4: The source of external public RNA-seq datasets.
|
Cancer type |
No. of samples |
Reference |
Accession number |
|
OSCC(HNSC) |
39 |
(Chen, et al., 2017) |
SRP078156 |
|
CRC |
10 |
(Lee, et al., 2016) |
SRR2089755 |
|
LUAD/LUSC |
45 |
(Jia, et al., 2018) |
GSE112996 |
|
BRCA |
357 |
(Jiang, et al., 2019) |
OEP000155 |
|
CRC |
106 |
(Vasaikar, et al., 2019) |
PRJNA514017 |
Chen, T.-W., et al. (2017) APOBEC3A is an oral cancer prognostic biomarker in Taiwanese carriers of an APOBEC deletion polymorphism. Nature Communications 8: 465.
Jia, Q., et al. (2018) Local mutational diversity drives intratumoral immune heterogeneity in non-small cell lung cancer. Nature Communications 9: 5361.
Jiang, Y.Z., et al. (2019) Genomic and Transcriptomic Landscape of Triple-Negative Breast Cancers: Subtypes and Treatment Strategies. Cancer Cell 35: 428-440.e425.
Lee, J.-R., et al. (2016) Transcriptome analysis of paired primary colorectal carcinoma and liver metastases reveals fusion transcripts and similar gene expression profiles in primary carcinoma and liver metastases. BMC Cancer 16: 539.
Vasaikar, S., et al. (2019) Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities. Cell 177: 1035-1049.e1019.